• Getting Started
• Opening and closing
• Installation
• Imaging Core
• Stack run
• Stack
• Vascular Interface
• Search
• Pivot points
• Find points
• Editing slabs
• Vascular tracing
• Point info
• Hyperstack panel
• Workflows
• Simple stack database
• Vascular workflow
• Reference
• Algorithms
• Gotchas
• FAQ
• Blog Posts
• Scoring tubes
• How to use Jekyll
• example user file
• change log

Specify setting in Igor command window

Set 2 default window widths. Switch between them with keyboard ‘]’. Values specify the width of the stack window in screen pixels.

root:bStack:gStackWindowWidth1 = 350
root:bStack:gStackWindowWidth2 = 767.5

Making a user file

• Make a .txt file in /bHyperstack_Defaults/Users/
• Load the file from within Igor using menu ‘Hyperstack -> Hyperstack - Load User File’

Example user.txt file

root:bNV:gUserName="Micek"

root:Hyperstack:gHyperstackWindowSize="Small"

#root:Hyperstack:gHyperstackRootHDD="Work:jhu:Hyperstack:"
root:Hyperstack:gHyperstackRootHDD="d:Users:cudmore:Hyperstack:"

#root:Hyperstack:gHyperstackRawRepo="Work:jhu:hyperstack:rawRepo:"
root:Hyperstack:gHyperstackRawRepo="d:Users:cudmore:hyperstack:rawRepo:"

#root:Hyperstack:gDatabasePath="Work:jhu:hyperstack:intermediate_hyperstack:micek:"
root:Hyperstack:gDatabasePath="d:Users:cudmore:hyperstack:micek:"

root:Hyperstack:gLoadAndPlotOnLoad=0

#root:bStack:gIAmSuperuser=1

#micek
#gHyperstackRootHDD = "d:Users:cudmore:Hyperstack:"
#gDatabasePath = "d:Users:cudmore:hyperstack:micek:"
#gHyperstackRawRepo = "d:Users:cudmore:hyperstack:rawRepo:"