About SanPy

If you find the code in this repository interesting, please email Robert Cudmore at (robert.cudmore@gmail.com) and we can get you started. We are looking for users and collaborators.

Please visit the MapManager projects page for more information on all our software projects.

Why is this useful?

We provide a Python package that can load, analyze, plot, and save eletropysiology recordings. This package is then accessed through a desktop application with a simple to use graphical user interface (GUI). Finally, the same code that drives the GUI can be scripted. In just a few lines of code, the exact same loading, analysis, plotting, and saving can be performed as is done with the GUI.

Why is this important?

When you publish a paper, you need to ensure your primary data is available for interogation and that your analysis can be reproduced. This software facilitates that by allowing you to share the raw data, provide the code that was used to analyze it, and explicity show how it was analyzed such that it can be verified and reproduced.

SanPy Manuscripts

Guarina L, Johnson TL, Griffith T, Santana LF, Cudmore RH (2024) SanPy: Software for the analysis and visualization of whole-cell current-clamp recordings. Biophys J, 2;123(7):759-769. doi: 10.1016/j.bpj.2024.02.025. PubMed: 38419330.

SanPy was originally described in a bioRxiv manuscript 2023.05.06.539660; doi: https://doi.org/10.1101/2023.05.06.539660]